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21 CFR Part 11 for cloud and SaaS systems

Published 18 min read

Chromolithograph of a closed qualification binder and a sealed archive box with a cobalt bottleFig. 01
The service runs somewhere else; the binder that proves it fits your use stays on your bench.

Who carries what when the records live in a provider's cloud

Stays with you

  • Intended use§ 11.10(a)
  • Open or closed call§ 11.3(b)
  • Who may get in§ 11.10(d), (g)
  • Signature policy and FDA letter§ 11.10(j), § 11.100(c)
  • Copies for FDA, for the full retention§ 11.10(b), (c)
  • Oversight of the provider2024 Q&A, Q18

The provider can carry

  • Hosting, backups, restoreAnnex 11 § 7
  • Product testing and releaseCSA guidance
  • The audit-trail engine§ 11.10(e)
  • Encryption at rest and in transit2024 Q&A, III.C
  • Its own staff's access SOPs2024 Q&A, III.C
  • Evidence for your supplier fileAnnex 11 § 3.4

What the provider carries is still your responsibility to check: it does the work, you hold the evidence that it was done.

Moving a LIMS, eQMS or ELN to a vendor's cloud does not move your Part 11 duties. It moves the servers, the backups and the release schedule, and it adds a third party whose staff can reach your records. That raises three questions every QA lead meets: is the system open or closed, what can you rely on the provider for, and what has to be written down before the first record goes in.

This guide answers them from the rule, FDA's 1997 commentary and its 2024 guidance on IT service providers, and Annex 11. Where the rule does not settle a case, we say so and label our reading.

The short answer

Part 11 does not change when your records move to a vendor's cloud. The rule binds the persons who use a system, and no contract moves that duty. FDA's 2024 question-and-answer guidance on clinical investigations says it plainly for data hosting and cloud software, platform and infrastructure services: “Regulated entities are responsible for ensuring that electronic records meet applicable part 11 requirements.”

What does change is who does the work. The provider runs the servers, the backups, the product testing and the release train. You decide whether the system fits your intended use, who may get in, how signatures are governed, and whether you can hand an inspector a complete copy of a record from five years ago. Your job is to choose a provider that can carry its half, put that half in writing, and keep evidence that it is carried. Before any of it, confirm the records are Part 11 records at all with the Part 11 applicability checker.

Common misreading

“Our vendor is Part 11 certified.” There is no such certificate. In 1997 FDA wrote that it “does not seek to certify or otherwise approve” signature programs, and in 2024 that it “does not perform preliminary evaluations of electronic systems” to decide whether they comply; systems are evaluated during an inspection. A vendor can state that its product supports the Part 11 controls. Whether your use of it complies is a claim only you can make.

Is a SaaS system open or closed?

Part 11 sorts systems by one test: who controls access. A closed system is “an environment in which system access is controlled by persons who are responsible for the content of electronic records that are on the system” (§ 11.3(b)(4)); an open system is the same sentence with “not” in it (§ 11.3(b)(9)). Closed systems carry the § 11.10 controls. Open systems carry those controls as appropriate plus the § 11.30 measures, such as document encryption and digital signature standards, from the point a record is created to the point it is received.

FDA called control of access “the most important factor” in the 1997 preamble (comment 41), and it gave cloud teams a sentence they still quote: where records are stored “on systems operated by third parties, such as commercial online services, access would be under control of the third parties and the agency would regard such a system as being open” (comment 44). The same preamble also left the basis for granting access, a “contractual relationship” included, to each firm.

Our reading. A contracted GxP system is not the 1997 commercial online service. Where the agreement puts every account under your approval, the vendor's admin and support accounts included, logs the vendor's access and lets you audit it, the people responsible control access and the system can be called closed. Where nothing in writing covers the vendor's own access, treat it as open. The rule does not settle the contracted case, which is why the open vs closed system check answers it with “depends” and names the terms. The panel below runs six common cloud setups through that same check.

Six cloud setups, read by the open vs closed system check

You add and remove users; the vendor's engineers keep support access, and the agreement covers it.

The check's answer

Depends — closed only on the contract's terms

  • 62 FR 13440–41, cmt 41FDA also left the basis for authorising access, "contractual relationship" included, to the firm.
  • Our readingA contracted GxP system is not the 1997 "commercial online service". If the agreement puts every account, the vendor's own included, under your approval, logs the vendor's access and lets you audit it, the people responsible control access and the system can be called closed. The rule does not settle this, so we say both.

Full reasons and the controls each answer carries: run your own setup through the check.

Two things follow whichever way you land. First, the classification is per record flow, not per product: a LIMS can be closed for results at rest and need § 11.30 for the certificates it emails. Second, FDA no longer lets the label decide the security work. Footnote 51 of the 2024 Q&A says that “because of changing technologies and the increased risk of cybersecurity threats, a risk assessment should be conducted for all electronic systems”, open or closed.

Annex 11 draws no open or closed line

If you also sell into the EU, Annex 11 never asks the question. It asks instead that “formal agreements must exist” with any third party that provides, configures, validates, maintains (remote access included) or retains a computerised system, with “clear statements of the responsibilities of the third party” (§ 3.1), and adds that “IT-departments should be considered analogous”. A written agreement is therefore owed on both sides of the Atlantic, whatever you call the system. The guide to EU Annex 11 covers the rest of that text.

Takeaway

Write the classification and its reason into the system's URS or validation plan, and cite the agreement clauses it rests on. If the closed reading depends on the contract, an inspector should be able to find the contract from the validation file in one step.

What stays with you, and what the provider can carry

FDA's 2024 Q&A lists what to weigh before choosing an IT service provider: the oversight it lets you perform, how it validates the services you will use, whether it can produce accurate and complete copies and give access to data for as long as the records must be kept, its migration, backup, recovery and contingency procedures, its access controls and the SOPs for granting and revoking access, secure time-stamped audit trails, protection of data at rest and in transit, its e-signature controls, and its relevant experience. Read as a split of work, it gives the table below.

Scroll sideways for every column

Part 11 work in a cloud system: who carries what
AreaStays with youThe provider can carryBasis
Validation for intended useDefine the intended use, rate each function by risk, test your configuration and workflows, sign the summary report.Its development life cycle, product testing and a validation summary you can review.§ 11.10(a); 2024 Q&A, Q7
Supplier assessmentAssess before you sign, to a depth set by risk; audit where the risk calls for it; keep the record.Answers the questionnaire, shares independent reports, allows the audit.Annex 11 § 3.2, § 4.5
AgreementA written agreement naming scope, roles (quality management included) and your access to data for the retention period.Signs it and works to it.Annex 11 § 3.1; 2024 Q&A, Q17
AccessApprove, review and remove accounts, roles and signing rights; decide whether and how provider staff get in.Login and role features; its own SOPs for granting and revoking staff access.§ 11.10(d), (g); 2024 Q&A, III.C
Audit trailRead it, review it where your rules ask, keep it with the record.A secure, computer-generated, time-stamped trail that nobody, its own staff included, can switch off or edit.§ 11.10(e)
Copies and dataProduce accurate and complete copies, human readable and electronic, when an inspector asks.Export functions, backups and tested restores.§ 11.10(b); Annex 11 § 7, § 8
Retention and exitKnow the predicate-rule retention period and hold a plan that keeps access for all of it, past the contract.Retrieval for the term; a complete export and a transition period at the end.§ 11.10(c); 2024 Q&A, Q17
ReleasesAssess each release against your validated functions, test by risk, record the decision.Notice, release notes and a summary of its own testing.CSA, Example 4; Annex 11 § 10
SignaturesThe accountability policy, identity checks before issuing, the certification letter to FDA.Manifestation, record linking and two-component signing built into the product.§§ 11.10(j), 11.50, 11.70, 11.100, 11.200
InspectionShow the agreements and your oversight records on request.Supplier quality and audit information available to inspectors; help producing records.2024 Q&A, Q18; Annex 11 § 3.4

Our split, built from the rule and guidance cited in the last column.

The left column never moves, because it is about your records and your intended use. The right column is where a good provider saves you work, and where a poor one leaves you holding gaps you cannot test your way out of. The three rows that cause the most trouble after go-live are data, the audit trail and the exit.

Data ownership means a copy you can produce

Part 11 never uses the word ownership. It asks for “the ability to generate accurate and complete copies of records in both human readable and electronic form suitable for inspection, review, and copying by the agency” (§ 11.10(b)), and for protection that allows “accurate and ready retrieval throughout the records retention period” (§ 11.10(c)). A contract line saying the customer owns its data is worth little if the export leaves the audit trail and the signatures behind. For clinical records FDA puts it as access: the sponsor should have access to all study-related records an IT service provider keeps (2024 Q&A, Q19).

Before go-live, export one closed record end to end, a CAPA with its approvals for example, and open it outside the service:

  1. 01The record itself: every field, in the version that was approved, and every earlier version.
  2. 02Its metadata: units, instrument or method identifiers, status, the user and time behind each entry.
  3. 03The audit trail: who created, changed or deleted what, when, and the old value next to the new.
  4. 04The signatures: printed name, date and time, and meaning for each one, still shown with the record (§ 11.50).
  5. 05Attachments: the files linked to the record, opened, not just listed.

Watch instrument data in particular. FDA's 2018 drug CGMP Q&A treats a spectral file that can be reprocessed as dynamic, and says a static printout of it “would not satisfy CGMP requirements to retain original records or true copies”. An export that flattens such data to PDF is a copy for reading, not a true copy.

Audit-trail access: read it yourself, and see the vendor in it

§ 11.10(e) asks for “secure, computer-generated, time-stamped audit trails” that record who created, changed or deleted a record, never obscure the old value, and are kept at least as long as the record. In a SaaS system put four questions to the provider. Can your QA read the trail in the application without raising a ticket? Does it record actions taken by the provider's support staff on your tenant? Does it export with the record? Is it kept, and returned, after you leave?

The second question carries the most weight. If support engineers can fix data from the back end and leave no line in your trail, neither your review nor a closed classification holds. Part 11 sets no review frequency; Annex 11 § 9 asks that trails be “regularly reviewed”, and the 2018 drug CGMP Q&A expects people who review a record to review the audit trail that goes with it. The guide to audit trails covers what a good one records, and the audit trail review checklist turns the review into a routine.

Retention outlives the subscription

Part 11 sets no retention period; the predicate rule does. Drug batch records are kept at least one year after the batch's expiration date (§ 211.180); GLP study records for the shortest of two years after approval, five years after submission, or two years after the study ends (§ 58.195). Periods like these can outlast the subscription, so the plan for the years after it ends has to exist on day one. FDA's 2024 Q&A asks for exactly that in the agreement: “A plan that ensures the sponsor will have access to data throughout the regulatory retention period.”

An exit plan names the export format, its scope (records, metadata, audit trails, signatures, attachments), a read-only period while you check it, and who deletes what afterwards. Annex 11 asks that a migration check data are “not altered in value and/or meaning” (§ 4.8) and that archived data be checked for accessibility, readability and integrity (§ 17). FDA's 2003 guidance does not object to archiving in a standard format such as PDF or XML as long as content and meaning are preserved, which is the test the dynamic-data point above applies.

Inspection risk

A lapsed subscription, a provider that closed, or an export that came back without audit trails, and an inspector asking for a record from inside the retention period. Retrieval for the whole period is a § 11.10(c) control and a predicate-rule duty; the provider's fate does not excuse it.

Takeaway

Run the export test once before go-live and once a year after, and keep the result in the validation file. It is the only evidence that your copies and your exit plan work.

The validation side of the split, from the URS to the summary report, is the subject of the computer system validation guide; this page stays with what the cloud adds to it. When you are choosing the provider, the comparisons of Part 11 eQMS software and LIMS for Part 11 labs read what vendors publish against the same rows.

Chromolithograph of two stacked archive boxes with a gridded document on topFig. 02
Two archives and one agreement on top: what you get back at exit is decided before you sign.

What to put in the quality agreement

FDA's 2024 Q&A recommends “a written agreement (e.g., a master service agreement with an associated service level agreement or quality agreement)” with IT service providers, and names three things it should hold: the scope of the work and service, the roles and responsibilities of both sides “including those related to quality management”, and “a plan that ensures the sponsor will have access to data throughout the regulatory retention period”. It adds that sponsors stay responsible for any obligation not specifically and lawfully transferred to the provider. Annex 11 § 3.1 asks for the same in one line: formal agreements with “clear statements of the responsibilities of the third party”.

In practice the commercial contract and the service level agreement cover price, uptime and liability. The quality agreement is the document that carries the GxP terms, and it is the one an inspector will ask for next to your oversight records (Q18). The sheet below is the clause list we would start from. Change the terms at the top and the clauses follow; copy or print it for the negotiation.

Large multi-tenant providers often will not sign a customer's own quality agreement. Then map their standard documents (security addendum, data processing terms, release policy, support access policy) against the sheet, clause by clause, and record each gap in the system's risk assessment with what you do instead: your own scheduled exports, a tighter review of the audit trail, a shorter periodic review. A gap you wrote down and compensated is a decision; a gap nobody noticed is a finding.

Takeaway

Sign the quality agreement before the first GxP record goes in, and cite its clause numbers in the URS rows they support. The URS template marks each row as met by the system, by procedure or by both; in a cloud system a row met by the system is met by the provider, so its clause number belongs next to it.

How vendor validation packs fit

GxP-focused SaaS vendors often offer a validation package: some mix of a product validation summary, test evidence from their own release testing, a requirements trace and sometimes scripts you can execute on your tenant. What it contains varies by vendor, so read it before you count on it. Wherever it sits, it is evidence for your supplier file and a head start on your own testing, not your validation. Systems built to keep those supplier files, with their audits and approvals, are read in the supplier quality management software comparison.

The guidance agrees on where it fits. Annex 11 says documentation supplied with off-the-shelf products “should be reviewed by regulated users to check that user requirements are fulfilled” (§ 3.3). FDA's 2024 Q&A says that when an IT service provider performs validation, you may review its development and management processes, validation processes, functional testing, and change control procedures and tracking logs to judge whether the system is fit for purpose (Q7). FDA's CSA guidance goes furthest: a manufacturer can take the developer's own testing and validation work “as the starting point and determine what additional activities may be needed”, and “for some lower-risk software features, functions, and operations, this may be all the assurance that is needed”.

What no vendor pack can cover is anything that is yours: the configuration you chose, the roles you set, the workflows that carry your records, data migrated from the old system, interfaces to instruments, and the procedures around it all. Those are where your test effort goes. The comparison of Part 11 validation software covers tools that run that test execution paperlessly.

FDA's own SaaS example

The CSA guidance works one SaaS case through end to end: a device maker adopting a SaaS product life cycle management system for project records. It is the clearest public statement of how FDA expects a vendor's work and the customer's to fit together.

Scroll sideways for every column

FDA's worked SaaS example in the CSA guidance, step by step
StepWhat the manufacturer didBasis
Intended useBroad project management with records, signatures and deliverables; a quality record whose integrity matters, but no direct effect on patient safety or product quality. No customization; basic configuration of user roles and accounts.CSA, Example 4
RiskA failure would affect the integrity of the quality record but would not foreseeably compromise safety, so the functions are not high process risk.CSA, Table 5
Supplier assessmentThe vendor's development life cycle, its quality management system and certifications, its cybersecurity documentation, and its infrastructure support for availability and reliability; the record kept under purchasing controls.CSA, Example 4
Service agreementRequirements for security, data integrity, privacy, availability, change management and business continuity.CSA, Example 4
Own testingConfiguration verification and user acceptance testing by exploratory, unscripted testing.CSA, Table 5
Automatic updatesThe vendor documents the changes, testing and results; the manufacturer assesses the effect on intended use, tests by risk and keeps a record of both.CSA, Example 4

Paraphrased from FDA's CSA guidance (February 2026), Example 4 and Table 5.

Note what the vendor carried (product testing, update documentation) and what the manufacturer kept (intended use, risk, the supplier decision, the agreement, configuration checks, the update assessment). That is the split in the table above, in FDA's own words.

Scope of the CSA guidance

FDA wrote CSA for device makers' production and quality system software; it does not replace Part 11, and for a drug or GLP lab it is guidance whose risk ideas are often borrowed, not a rule that binds you. How it differs from classic validation is set out in CSA vs CSV, and the validation scope planner sizes the testing per function.

Takeaway

Ask for the vendor's pack during selection, not after signature. Map it against your URS row by row: every row it covers with evidence you have reviewed needs less of your testing; every row it does not cover is yours in full.

The cloud system file, at a glance

Classification
Open or closed, with the reason, in the URS or validation plan; the agreement clauses it rests on cited.
Supplier file
Questionnaire or audit, independent reports, the provider's validation summary and release process, your review of each.
Agreement
Master service agreement plus a quality agreement: scope, roles, access, audit trail, changes, data, exit, audits.
Validation
Your intended use, risk per function, configuration record, the tests you ran, the summary report with QA's signature.
Exit test
One full export of records, audit trails and signature manifestations, opened and read back outside the service.
Release log
Each provider release: notes read, impact on validated functions, the testing it earned, who signed it off.
Procedures
Account approval and review, signature accountability (§ 11.10(j)), backup and restore checks, periodic review.

Questions

Does putting a system in a public cloud make it an open system?

Not by itself. The test in § 11.3 is who controls access, not where the servers are. A system you reach over the internet can be closed if the people responsible for the records control who gets in. What makes cloud hard is the provider's own staff: their access has to sit under your control in writing for a closed reading to hold. Run your setup through the open vs closed system check.

Is the provider's SOC report enough to qualify it?

It is one input. FDA's CSA guidance lists “Service Organization Controls reports” and ISO certifications among several sources, next to the vendor's development and testing practices and its data integrity controls. A SOC report speaks to the provider's environment. It does not test your configuration, your users or your intended use, so it sizes your own testing rather than replacing it.

The vendor says it is Part 11 compliant. Are we?

Not on that statement. FDA said in 1997 that it “does not seek to certify or otherwise approve” such programs, and its 2024 Q&A says it “does not perform preliminary evaluations” of systems; they are evaluated during an inspection. Part 11 binds the people who use the system. The vendor's statement goes in your supplier file as evidence about the product.

Who sends FDA the non-repudiation letter for signatures in a SaaS system?

You do. § 11.100(c) puts the certification on the persons using electronic signatures, and FDA accepts an individual or a company-wide letter. The provider cannot certify your signatures for you, however the signing screens are built.

Can FDA inspect our cloud provider?

For clinical investigations FDA says it “may inspect IT service providers who have assumed regulatory responsibilities”, and may run focused inspections when trial data integrity is in doubt; the trial systems themselves are read in our Part 11 EDC and eConsent comparison. In every case it expects you to show the agreements and your oversight records on request. Annex 11 § 3.4 asks that supplier quality and audit information be made available to inspectors.

Do we revalidate after every vendor release?

You assess every release; you retest what the risk calls for. FDA's own SaaS example has the vendor send a summary of each automatic update, its testing and results, and the manufacturer assess the effect on intended use and test by risk. The CSA validation scope planner helps size that testing function by function.

Is our own instance on rented cloud servers different from SaaS?

Your team runs more of it, but the provider still runs the hardware and its staff can reach it. The open vs closed check treats both as hosted: closed only on the terms of an agreement that puts the operator's access under your control. For device makers, FDA's CSA guidance adds that cloud storage holding quality records gets assurance focused on record integrity and the Part 11 requirements for those records.

Sources