Chromatography data system software: six CDS read against Part 11
Published , reviewed
Verdict
- Best overall
- Empower Chromatography Data SystemAcquisition, processing, reporting and storage in one central database, with 8 of 10 rows described on Waters' own pages: archives that keep results, methods and audit trails together, privileges that let a user sign for review but not approve, and validation planning offered as a Waters service.
- Best for a small lab with mixed instruments
- ClarityControls instruments from many manufacturers on permanent licenses and stores files without a database engine, so there is no server database to run. It comes with built-in IQ and OQ, a validation kit and a declaration of software validation. Its pages do not describe how a signature is displayed and linked to the result, so run the signing steps in the demo.
- Best for FDA and EU inspections
- OpenLab CDSAgilent's white paper for version 2.8 answers the related Annex 11 sections one by one, and says the audit trail is stored inside the record so it cannot be separated from it. It names no validation documents for customers, so plan that work yourself.
Fig. 01In a QC lab the chromatography data system is where many release results are made: the instrument writes a signal, and the CDS turns it into a number through integration settings someone chose. Change the settings and the number changes. That is why FDA's data integrity guidance keeps coming back to chromatography, and why a CDS should be bought on its audit trail and review screens before anything else.
We read what six CDS vendors publish about each Part 11 control on their own pages, and set it beside what FDA's 2018 data integrity Q&A says about chromatography. The lab-side rules for LIMS and the wider data integrity software category have their own pages.
Why findings gather around the CDS
FDA's “Data Integrity and Compliance With Drug CGMP: Questions and Answers” (December 2018) is guidance for drug manufacturers, and much of it is about lab data. When it needs an example, it reaches for chromatography: an HPLC run for what an audit trail holds, a chromatogram for a dynamic record, injections for when data must be saved. Two more answers are about chromatography alone, and one says who reads the trail. The table quotes each, with FDA's answer numbers.
Scroll sideways for the full table
| Answer | What FDA wrote | What the CDS has to do |
|---|---|---|
| Q&A 1.cWhat the trail on an HPLC run holds | “the audit trail for a high performance liquid chromatography (HPLC) run should include the user name, date/time of the run, the integration parameters used, and details of a reprocessing, if any. Documentation should include change justification for the reprocessing.” | Trail every integration parameter and every reprocessing, and ask for a reason when someone reprocesses. |
| Q&A 1.dWhy the data file is the record | “a dynamic chromatographic record may allow the user to change the baseline and reprocess chromatographic data so that the resulting peaks may appear smaller or larger.” | Keep the data file with its processing history. A printed peak table is not the whole record. |
| Q&A 12Save each injection as it happens | “chromatographic data should be saved to durable media upon completion of each step or injection (e.g., peak integration or processing steps; finished, incomplete, or aborted injections) instead of at the end of an injection set … Aborted or incomplete injections should be captured in audit trails and should be investigated and justified.” | Write each injection and each processing step to storage when it finishes, aborted runs included. |
| Q&A 13Test, prep and equilibration runs | “FDA considers it a violative practice to use an actual sample in test, prep, or equilibration runs as a means of disguising testing into compliance. … All data—including obvious errors and failing, passing, and suspect data—must be in the CGMP records that are retained and subject to review and oversight.” | Every injection in the sequence, system suitability included, stays in the record the reviewer sees. |
| Q&A 14Keeping only the final result | “Is it acceptable to only save the final results from reprocessed laboratory chromatography? No. … If chromatography is reprocessed, written procedures must be established and followed and each result retained for review” | A new processing result is saved beside the old one, never over it. |
| Q&A 7Who reviews the trail | “Personnel responsible for record review under CGMP should review the audit trails that capture changes to data associated with the record as they review the rest of the record” | The reviewer needs the trail for one result on the same screen or report as the result. |
Quotes from FDA, Data Integrity and Compliance With Drug CGMP: Questions and Answers (December 2018), read 2026-10-22. The guidance is nonbinding and written for drug CGMP (parts 210, 211 and 212). The right-hand column is our reading for a CDS.
The guidance gives the background in one sentence: “In recent years, FDA has increasingly observed CGMP violations involving data integrity during CGMP inspections,” and these have led to “warning letters, import alerts, and consent decrees.” It publishes no count there, and neither do we.
Inspection risk
Answer 13 is framed around warning letters: why FDA has cited using actual samples in system suitability, test, prep or equilibration runs. A CDS that lets an analyst inject a sample, look at the result and leave the injection out of the reported sequence makes this practice easy to commit and hard to see. Every injection, aborted ones included, belongs in the record the reviewer opens.
Takeaway
Judge a CDS on four things the guidance names: the trail on reprocessing, saving each injection as it happens, keeping every processed result, and putting the trail in front of the reviewer. Our guide to GxP audit trails covers what a trail entry has to hold.
A chromatogram is a dynamic record
The Q&A sorts records into two kinds. A static record is fixed: a paper printout or an electronic image. A dynamic record lets the user interact with its content, and its example is a chromatographic record whose baseline can be moved so that “the resulting peaks may appear smaller or larger.”
Schematic, not real data
The shaded area is what the peak measures against the moved baseline. Against the baseline as acquired it is larger. Both results come from the same file, which is why the file and its trail are the record.
Scroll sideways for both columns
| Question | Static record | Dynamic record |
|---|---|---|
| FDA's definition (Q&A 1.d) | “a fixed-data record such as a paper record or an electronic image” | “the record format allows interaction between the user and the record content” |
| In a chromatography lab | The printed chromatogram and peak table, or a PDF of them. | The data file: raw signal, method, integration events and every processing result. |
| Can the result change? | No. What was printed stays printed. | Yes. A moved baseline or a changed integration event gives a new area and a new result. |
| Enough to keep on its own? (Q&A 10) | Only where it is the original record or a true copy, as with a balance printout. | The printout of a dynamic record “would not satisfy CGMP requirements to retain original records or true copies” (FDA's example is an FT-IR file). |
Answer 10 draws the consequence. A printout can serve as the record only where it is the original or a true copy, as with a balance. For a dynamic file it says a static record “would not satisfy CGMP requirements to retain original records or true copies” (§ 211.180(d)). FDA's example there is an FT-IR spectral file; by the definition in answer 1.d, a chromatogram you can reprocess is the same kind of record. It is FDA's “original or a true copy” applied to a peak table; our guide to the ALCOA+ principles covers the other attributes.
Common misreading
“We print, sign and file the chromatogram, so the data files do not matter” fails for a CDS. The signed printout shows one processing of the data. The file holds the others, and the Q&A expects each result of a reprocessing to be kept for review.
Requirement by requirement
10 rows, each read on the vendor's own pages. A row is verified only where the vendor's documentation describes the control; a general “Part 11 compliant” line counts as stated.
Scroll sideways for all vendors
| Requirement | Empower Chromatography Data System | Chromeleon CDS | OpenLab CDS | LabSolutions CS | Clarity | SimplicityChrom CDS |
|---|---|---|---|---|---|---|
| Signature shows name, date and time, and meaning§ 11.50 | verified | verified | verified | stated | stated | stated |
| Signature linked to its record so it cannot be moved§ 11.70 | verified | verified | verified | stated | stated | stated |
| Two distinct components to sign§ 11.200(a) | verified | verified | verified | stated | verified | stated |
| Secure, computer-generated, time-stamped audit trail§ 11.10(e) | verified | verified | verified | verified | verified | stated |
| Audit trail kept as long as the record§ 11.10(e) | verified | stated | verified | stated | stated | stated |
| Validation documentation to support the customer's own validation§ 11.10(a) | verified | verified | not stated | verified | verified | not stated |
| Accurate, complete copies for inspection§ 11.10(b) | verified | verified | verified | verified | stated | stated |
| Access and authority checks by role§ 11.10(d), (g) | verified | verified | verified | verified | verified | stated |
| Open-system controls: encryption, digital signatures§ 11.30 | not stated | not stated | not stated | not stated | stated | not stated |
| EU Annex 11 statementEU GMP Annex 11 | stated | not stated | verified | not stated | stated | not stated |
verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.
Two dates to keep apart
The read date is the day we read each vendor's pages, not the date of the document behind the row. Some of the Part 11 papers these vendors publish carry dates several years old, and a paper written for an earlier release may not describe the screens you will buy. Ask for the one that matches your version.
What to make the vendor show you
The table says what a vendor has written down. A demo shows whether the screens behave that way. Pick the CDS you are seeing next: each of the eight steps shows what that vendor's own pages say about the row it tests, so you know which ones need the closest look. Print it or copy it into the meeting notes, and keep the answers for your validation file.
Empower Chromatography Data System
Waters, vendor pages read 2026-10-22
- 01
Reprocess a finished injection: move the baseline or change one integration parameter, then save.
The trail shows the old and new settings, who, when and a reason. The first result can still be opened.
Q&A 1.c, 14; § 11.10(e)
Their pages on “Secure, computer-generated, time-stamped audit trail”: verified
- 02
Abort an injection part-way through a sequence.
The aborted injection is saved and visible in the sequence and the trail. Nothing waits for the end of the set to be written.
Q&A 12
Their pages on “Secure, computer-generated, time-stamped audit trail”: verified
- 03
Log in as an analyst and try to delete an injection, a sequence or a data file, then try to overwrite a result.
Refused for that role, or allowed only with a trail entry that keeps the original. Ask which roles can delete, and who can switch the trail off.
Q&A 12; § 11.10(e), (g)
Their pages on “Access and authority checks by role”: verified Privileges can let a user sign for review but not approve.
- 04
Integrate one peak by hand and send the result for review.
The reviewer can see that the peak was integrated by hand, by whom and why, while reviewing the result, without asking for a separate report.
Q&A 7, 14
Their pages on “Secure, computer-generated, time-stamped audit trail”: verified
- 05
Sign the result as reviewer, then sign it as approver.
Printed name, date and time, and meaning on the screen and on the printout. A user with review rights only cannot approve.
§ 11.50; § 11.10(g)
Their pages on “Signature shows name, date and time, and meaning”: verified The e-signature history shows the three manifestation items in readable form.
- 06
Change the processing of a result that is already signed.
The signature cannot carry over to the changed result. Ask what happens to it and how the change shows.
§ 11.70
Their pages on “Signature linked to its record so it cannot be moved”: verified
- 07
Pull the trail for one sample over your review period and print it.
Filter by sample, sequence or user. A readable, complete copy that sits with the record.
Q&A 8; § 11.10(b)
Their pages on “Accurate, complete copies for inspection”: verified
- 08
Ask for the Part 11 document and validation papers for the exact version you will buy.
The version on the document matches your quote. A public paper can be older than the software on sale.
§ 11.10(a)
Their pages on “Validation documentation to support the customer's own validation”: verified Validation planning and reporting is offered as a Waters service.
verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.
Once the system is live, the same checks become routine review. The audit trail review checklist turns them into a signed worksheet, and the signature manifestation check tests a signed report against § 11.50.
Which CDS for which lab
The verdict picks three. Every CDS here suits a lab somewhere, so this is the whole lineup set against the lab each vendor says it serves, with how much of the table its pages describe.
- A small QC lab with instruments from several makers
- ClarityQC/QA labs, CROs and academic labs that want instrument-independent software on permanent licenses.4 verified, 6 stated, 0 not stated of 10 rows
- One database for acquisition, processing and reporting
- Empower Chromatography Data SystemRegulated labs that want acquisition, processing, reporting and data distribution in one system.8 verified, 1 stated, 1 not stated of 10 rows
- Results that pass through staged review and approval
- Chromeleon CDSRegulated labs running LC, GC and mass spectrometry that need staged review and approval.7 verified, 1 stated, 2 not stated of 10 rows
- Inspections from both FDA and an EU authority
- OpenLab CDSRegulated labs running LC, GC and single-quad MS instruments that want a clause-by-clause Part 11 map.8 verified, 0 stated, 2 not stated of 10 rows
- Many instruments and users on one server
- LabSolutions CSLabs with many instruments and users that want one server database.4 verified, 4 stated, 2 not stated of 10 rows
- A lab that runs one maker's chromatographs
- SimplicityChrom CDSLabs running PerkinElmer chromatography instruments.0 verified, 7 stated, 3 not stated of 10 rows
verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.
Whatever you choose, validation stays with your lab under § 11.10(a). Write the steps above into your user requirement specification so they become tests, and scope the rest by risk as our guide to computer system validation describes.
Vendor by vendor
Each card shows the six rows a chromatography result leans on: the trail and its retention, who may change or sign, the signature and its link to the result, and the validation papers.
Empower Chromatography Data System
CDS- What it is
- Chromatography software for acquiring, processing, reporting and storing chromatography data in a central database. It comes in QuickStart, Pro and Open Access interfaces for different users.
- Who it fits
- Regulated labs that want acquisition, processing, reporting and data distribution in one system.
| Requirement | Status |
|---|---|
| Secure, computer-generated, time-stamped audit trail§ 11.10(e) | verified |
| Audit trail kept as long as the record§ 11.10(e) | verifiedArchives keep results, methods and audit trails together. |
| Access and authority checks by role§ 11.10(d), (g) | verifiedPrivileges can let a user sign for review but not approve. |
| Signature shows name, date and time, and meaning§ 11.50 | verifiedThe e-signature history shows the three manifestation items in readable form. |
| Signature linked to its record so it cannot be moved§ 11.70 | verified |
| Validation documentation to support the customer's own validation§ 11.10(a) | verifiedValidation planning and reporting is offered as a Waters service. |
verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.
Waters' own Part 11 pageread 2026-10-22
Chromeleon CDS
CDS- What it is
- Chromatography data system software for instrument control, data processing, reporting and data management. Version 7.3.2 includes audit trail review tools and up to three signing stages per sequence.
- Who it fits
- Regulated labs running LC, GC and mass spectrometry that need staged review and approval.
| Requirement | Status |
|---|---|
| Secure, computer-generated, time-stamped audit trail§ 11.10(e) | verified |
| Audit trail kept as long as the record§ 11.10(e) | stated |
| Access and authority checks by role§ 11.10(d), (g) | verified |
| Signature shows name, date and time, and meaning§ 11.50 | verifiedSubmit, review and approve levels; name, meaning and time can be included in reports. |
| Signature linked to its record so it cannot be moved§ 11.70 | verifiedA hash code is stored with the signed sequence and can be re-checked. |
| Validation documentation to support the customer's own validation§ 11.10(a) | verifiedBuilt-in qualification tools plus IQ/OQ/PQ and validation services. |
verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.
Check with the vendor
Some rows above are stated or not stated on Thermo Fisher Scientific's own pages. Ask Thermo Fisher Scientific for its validation documentation and test the control in your own validation before you rely on it.
Thermo Fisher Scientific's own Part 11 pageread 2026-10-22
OpenLab CDS
CDS- What it is
- Chromatography data system software that controls acquisition and processing of LC, GC, single-quadrupole LC/MS and GC/MS, and A/D data. Agilent publishes a clause-by-clause Part 11 and Annex 11 white paper for version 2.8.
- Who it fits
- Regulated labs running LC, GC and single-quad MS instruments that want a clause-by-clause Part 11 map.
| Requirement | Status |
|---|---|
| Secure, computer-generated, time-stamped audit trail§ 11.10(e) | verified |
| Audit trail kept as long as the record§ 11.10(e) | verifiedThe audit trail is stored inside the record and cannot be separated from it. |
| Access and authority checks by role§ 11.10(d), (g) | verified |
| Signature shows name, date and time, and meaning§ 11.50 | verified |
| Signature linked to its record so it cannot be moved§ 11.70 | verifiedSigned records are check-summed; an altered file will not open. |
| Validation documentation to support the customer's own validation§ 11.10(a) | not statedAgilent says it verifies the software; the paper does not name documents for customers. |
verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.
Check with the vendor
Some rows above are stated or not stated on Agilent's own pages. Ask Agilent for its validation documentation and test the control in your own validation before you rely on it.
Agilent's own Part 11 pageread 2026-10-22
LabSolutions CS
CDS- What it is
- The networked version of Shimadzu's LabSolutions analytical data system, keeping all data in a server database that client PCs reach over the network. It manages data from LC, GC, LC-MS and GC-MS and from other instruments.
- Who it fits
- Labs with many instruments and users that want one server database.
| Requirement | Status |
|---|---|
| Secure, computer-generated, time-stamped audit trail§ 11.10(e) | verifiedLogs all operations and can record the reason for changing settings. |
| Audit trail kept as long as the record§ 11.10(e) | stated |
| Access and authority checks by role§ 11.10(d), (g) | verified |
| Signature shows name, date and time, and meaning§ 11.50 | stated |
| Signature linked to its record so it cannot be moved§ 11.70 | stated |
| Validation documentation to support the customer's own validation§ 11.10(a) | verifiedIQ/OQ documents, certificates of compliance and validation support. |
verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.
Check with the vendor
Some rows above are stated or not stated on Shimadzu's own pages. Ask Shimadzu for its validation documentation and test the control in your own validation before you rely on it.
Shimadzu's own Part 11 pageread 2026-10-22
Clarity
CDS- What it is
- Chromatography software that controls instruments from many manufacturers and processes their data on permanent licenses. It stores files without a database engine and offers user accounts, audit trail and electronic signatures for regulated work.
- Who it fits
- QC/QA labs, CROs and academic labs that want instrument-independent software on permanent licenses.
| Requirement | Status |
|---|---|
| Secure, computer-generated, time-stamped audit trail§ 11.10(e) | verified |
| Audit trail kept as long as the record§ 11.10(e) | stated |
| Access and authority checks by role§ 11.10(d), (g) | verified |
| Signature shows name, date and time, and meaning§ 11.50 | stated |
| Signature linked to its record so it cannot be moved§ 11.70 | stated |
| Validation documentation to support the customer's own validation§ 11.10(a) | verifiedBuilt-in IQ and OQ, a validation kit and a declaration of software validation. |
verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.
Check with the vendor
Some rows above are stated or not stated on DataApex's own pages. Ask DataApex for its validation documentation and test the control in your own validation before you rely on it.
DataApex's own Part 11 pageread 2026-10-22
SimplicityChrom CDS
CDS- What it is
- Chromatography data system software for controlling PerkinElmer HPLC, UHPLC, GC and GC/MS instruments, processing data and generating results. Part 11 tools such as audit trail and review and approval are built into the main application.
- Who it fits
- Labs running PerkinElmer chromatography instruments.
| Requirement | Status |
|---|---|
| Secure, computer-generated, time-stamped audit trail§ 11.10(e) | stated |
| Audit trail kept as long as the record§ 11.10(e) | stated |
| Access and authority checks by role§ 11.10(d), (g) | stated |
| Signature shows name, date and time, and meaning§ 11.50 | stated |
| Signature linked to its record so it cannot be moved§ 11.70 | stated |
| Validation documentation to support the customer's own validation§ 11.10(a) | not stated |
verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.
Check with the vendor
Some rows above are stated or not stated on PerkinElmer's own pages. Ask PerkinElmer for its validation documentation and test the control in your own validation before you rely on it.
PerkinElmer's own Part 11 pageread 2026-10-22
How we read the vendors
Verdicts are editorial: no vendor can buy a verdict position or displace another vendor.
verified means we read the control described on the vendor's own documentation (help centre, validation pack page, compliance paper or trust page) on 2026-10-22. stated means the vendor claims it and we did not check it. not stated means the vendor publishes nothing on it.
FDA keeps no list of certified or approved Part 11 software. Compliance is a validation claim each regulated company makes for its own use of a system, so a vendor's Part 11 claim is where your validation starts, not where it ends.
Questions
Is there an FDA-certified or approved CDS?
No. FDA keeps no list of certified or approved Part 11 software. Part 11 binds the people who use a system, so a CDS vendor's Part 11 claim means it states its software supports the controls. Your lab still validates the system for its own use § 11.10(a) and writes the procedures around it.
Can we keep the signed printout and archive or delete the data files?
Not for a chromatogram you can reprocess. FDA's 2018 Q&A calls a chromatographic record that lets you change the baseline and reprocess “dynamic”, and says a printout of a dynamic record “would not satisfy CGMP requirements to retain original records or true copies”. A true copy of a dynamic record may be kept in the original format or one that preserves its content and meaning, provided a suitable reader is readily available. Plan the archive around the data file, its metadata and its trail.
Is manual integration allowed?
The 2018 Q&A does not use the words “manual integration”. What it says about reprocessing covers it: the trail should hold the integration parameters and “details of a reprocessing” with a justification (answer 1.c), reprocessing “should not be regularly needed”, and when it happens your written procedure must be followed and “each result retained for review” (answer 14). Your SOP decides when a hand-drawn baseline is allowed; the CDS has to make every one visible to the reviewer.
Who reviews the CDS audit trail, and how often?
Part 11 requires the trail § 11.10(e), not a review schedule. FDA's 2018 Q&A says the people who review the record should review the trail of changes to it “as they review the rest of the record”, at the frequency CGMP sets for the data (for example, before batch release) or, where none is set, at a frequency based on risk. EU Annex 11 § 9 says trails should be “regularly reviewed”. Our audit trail review checklist builds the worksheet, with a chromatography system as its worked example.
Does the Q&A apply to a GLP or device test lab?
It is written for drug CGMP (parts 210, 211 and 212) and is nonbinding. A GLP or device lab is held to its own predicate rules, such as § 58.130(e) for GLP data, which says changes must not obscure the original entry. The chromatography answers still make a practical test of any CDS you are about to buy.
Do we need a CDS if our LIMS holds the results?
The LIMS usually holds the reported value; the CDS holds the raw data, the processing and its trail, which is the dynamic record the Q&A is about. Both carry Part 11 rows, and where a LIMS ends and a CDS begins comes down to the record each one owns. Our LIMS comparison reads the systems on the results side against the same requirement rows.
Sources
Regulation text from the eCFR and EudraLex; guidance from FDA. Vendor sources are linked on each vendor card. General information, not regulatory advice.
- Data Integrity and Compliance With Drug CGMP: Questions and Answers (guidance, December 2018), FDAread 2026-10-22
- Data Integrity and Compliance With Drug CGMP: Questions and Answers (PDF), FDAread 2026-10-22
- 21 CFR Part 11, Electronic Records; Electronic Signatures, eCFRread 2026-10-22
- 21 CFR Part 211, CGMP for Finished Pharmaceuticals, eCFRread 2026-10-22
- 21 CFR Part 58, Good Laboratory Practice for Nonclinical Laboratory Studies, eCFRread 2026-10-22
- Part 11, Electronic Records; Electronic Signatures: Scope and Application (guidance, 2003), FDAread 2026-10-22
- EudraLex Volume 4, Annex 11: Computerised Systems (2011), European Commissionread 2026-10-22