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Chromatography data system software: six CDS read against Part 11

Published , reviewed

Verdict

Best overall
Empower Chromatography Data SystemAcquisition, processing, reporting and storage in one central database, with 8 of 10 rows described on Waters' own pages: archives that keep results, methods and audit trails together, privileges that let a user sign for review but not approve, and validation planning offered as a Waters service.
Best for a small lab with mixed instruments
ClarityControls instruments from many manufacturers on permanent licenses and stores files without a database engine, so there is no server database to run. It comes with built-in IQ and OQ, a validation kit and a declaration of software validation. Its pages do not describe how a signature is displayed and linked to the result, so run the signing steps in the demo.
Best for FDA and EU inspections
OpenLab CDSAgilent's white paper for version 2.8 answers the related Annex 11 sections one by one, and says the audit trail is stored inside the record so it cannot be separated from it. It names no validation documents for customers, so plan that work yourself.
Chromolithograph of cobalt sample vials in front of a circular chart recorder drawing peaksFig. 01
Each vial becomes an injection, and each injection is a record the reviewer has to see.

In a QC lab the chromatography data system is where many release results are made: the instrument writes a signal, and the CDS turns it into a number through integration settings someone chose. Change the settings and the number changes. That is why FDA's data integrity guidance keeps coming back to chromatography, and why a CDS should be bought on its audit trail and review screens before anything else.

We read what six CDS vendors publish about each Part 11 control on their own pages, and set it beside what FDA's 2018 data integrity Q&A says about chromatography. The lab-side rules for LIMS and the wider data integrity software category have their own pages.

Why findings gather around the CDS

FDA's “Data Integrity and Compliance With Drug CGMP: Questions and Answers” (December 2018) is guidance for drug manufacturers, and much of it is about lab data. When it needs an example, it reaches for chromatography: an HPLC run for what an audit trail holds, a chromatogram for a dynamic record, injections for when data must be saved. Two more answers are about chromatography alone, and one says who reads the trail. The table quotes each, with FDA's answer numbers.

Scroll sideways for the full table

What FDA's 2018 data integrity Q&A says about chromatography
AnswerWhat FDA wroteWhat the CDS has to do
Q&A 1.cWhat the trail on an HPLC run holds“the audit trail for a high performance liquid chromatography (HPLC) run should include the user name, date/time of the run, the integration parameters used, and details of a reprocessing, if any. Documentation should include change justification for the reprocessing.”Trail every integration parameter and every reprocessing, and ask for a reason when someone reprocesses.
Q&A 1.dWhy the data file is the record“a dynamic chromatographic record may allow the user to change the baseline and reprocess chromatographic data so that the resulting peaks may appear smaller or larger.”Keep the data file with its processing history. A printed peak table is not the whole record.
Q&A 12Save each injection as it happens“chromatographic data should be saved to durable media upon completion of each step or injection (e.g., peak integration or processing steps; finished, incomplete, or aborted injections) instead of at the end of an injection set … Aborted or incomplete injections should be captured in audit trails and should be investigated and justified.”Write each injection and each processing step to storage when it finishes, aborted runs included.
Q&A 13Test, prep and equilibration runs“FDA considers it a violative practice to use an actual sample in test, prep, or equilibration runs as a means of disguising testing into compliance. … All data—including obvious errors and failing, passing, and suspect data—must be in the CGMP records that are retained and subject to review and oversight.”Every injection in the sequence, system suitability included, stays in the record the reviewer sees.
Q&A 14Keeping only the final result“Is it acceptable to only save the final results from reprocessed laboratory chromatography? No. … If chromatography is reprocessed, written procedures must be established and followed and each result retained for review”A new processing result is saved beside the old one, never over it.
Q&A 7Who reviews the trail“Personnel responsible for record review under CGMP should review the audit trails that capture changes to data associated with the record as they review the rest of the record”The reviewer needs the trail for one result on the same screen or report as the result.

Quotes from FDA, Data Integrity and Compliance With Drug CGMP: Questions and Answers (December 2018), read 2026-10-22. The guidance is nonbinding and written for drug CGMP (parts 210, 211 and 212). The right-hand column is our reading for a CDS.

The guidance gives the background in one sentence: “In recent years, FDA has increasingly observed CGMP violations involving data integrity during CGMP inspections,” and these have led to “warning letters, import alerts, and consent decrees.” It publishes no count there, and neither do we.

Inspection risk

Answer 13 is framed around warning letters: why FDA has cited using actual samples in system suitability, test, prep or equilibration runs. A CDS that lets an analyst inject a sample, look at the result and leave the injection out of the reported sequence makes this practice easy to commit and hard to see. Every injection, aborted ones included, belongs in the record the reviewer opens.

Takeaway

Judge a CDS on four things the guidance names: the trail on reprocessing, saving each injection as it happens, keeping every processed result, and putting the trail in front of the reviewer. Our guide to GxP audit trails covers what a trail entry has to hold.

A chromatogram is a dynamic record

The Q&A sorts records into two kinds. A static record is fixed: a paper printout or an electronic image. A dynamic record lets the user interact with its content, and its example is a chromatographic record whose baseline can be moved so that “the resulting peaks may appear smaller or larger.”

Schematic, not real data

One peak integrated against two baselines gives two different areasbaseline as acquiredbaseline moved by handsame injection, same data file, two peak areas

The shaded area is what the peak measures against the moved baseline. Against the baseline as acquired it is larger. Both results come from the same file, which is why the file and its trail are the record.

Scroll sideways for both columns

Static and dynamic chromatography records
QuestionStatic recordDynamic record
FDA's definition (Q&A 1.d)“a fixed-data record such as a paper record or an electronic image”“the record format allows interaction between the user and the record content”
In a chromatography labThe printed chromatogram and peak table, or a PDF of them.The data file: raw signal, method, integration events and every processing result.
Can the result change?No. What was printed stays printed.Yes. A moved baseline or a changed integration event gives a new area and a new result.
Enough to keep on its own? (Q&A 10)Only where it is the original record or a true copy, as with a balance printout.The printout of a dynamic record “would not satisfy CGMP requirements to retain original records or true copies” (FDA's example is an FT-IR file).

Answer 10 draws the consequence. A printout can serve as the record only where it is the original or a true copy, as with a balance. For a dynamic file it says a static record “would not satisfy CGMP requirements to retain original records or true copies” (§ 211.180(d)). FDA's example there is an FT-IR spectral file; by the definition in answer 1.d, a chromatogram you can reprocess is the same kind of record. It is FDA's “original or a true copy” applied to a peak table; our guide to the ALCOA+ principles covers the other attributes.

Common misreading

“We print, sign and file the chromatogram, so the data files do not matter” fails for a CDS. The signed printout shows one processing of the data. The file holds the others, and the Q&A expects each result of a reprocessing to be kept for review.

Requirement by requirement

10 rows, each read on the vendor's own pages. A row is verified only where the vendor's documentation describes the control; a general “Part 11 compliant” line counts as stated.

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Part 11 requirements by chromatography data system
RequirementEmpower Chromatography Data SystemChromeleon CDSOpenLab CDSLabSolutions CSClaritySimplicityChrom CDS
Signature shows name, date and time, and meaning§ 11.50verifiedverifiedverifiedstatedstatedstated
Signature linked to its record so it cannot be moved§ 11.70verifiedverifiedverifiedstatedstatedstated
Two distinct components to sign§ 11.200(a)verifiedverifiedverifiedstatedverifiedstated
Secure, computer-generated, time-stamped audit trail§ 11.10(e)verifiedverifiedverifiedverifiedverifiedstated
Audit trail kept as long as the record§ 11.10(e)verifiedstatedverifiedstatedstatedstated
Validation documentation to support the customer's own validation§ 11.10(a)verifiedverifiednot statedverifiedverifiednot stated
Accurate, complete copies for inspection§ 11.10(b)verifiedverifiedverifiedverifiedstatedstated
Access and authority checks by role§ 11.10(d), (g)verifiedverifiedverifiedverifiedverifiedstated
Open-system controls: encryption, digital signatures§ 11.30not statednot statednot statednot statedstatednot stated
EU Annex 11 statementEU GMP Annex 11statednot statedverifiednot statedstatednot stated

verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.

Two dates to keep apart

The read date is the day we read each vendor's pages, not the date of the document behind the row. Some of the Part 11 papers these vendors publish carry dates several years old, and a paper written for an earlier release may not describe the screens you will buy. Ask for the one that matches your version.

What to make the vendor show you

The table says what a vendor has written down. A demo shows whether the screens behave that way. Pick the CDS you are seeing next: each of the eight steps shows what that vendor's own pages say about the row it tests, so you know which ones need the closest look. Print it or copy it into the meeting notes, and keep the answers for your validation file.

Once the system is live, the same checks become routine review. The audit trail review checklist turns them into a signed worksheet, and the signature manifestation check tests a signed report against § 11.50.

Which CDS for which lab

The verdict picks three. Every CDS here suits a lab somewhere, so this is the whole lineup set against the lab each vendor says it serves, with how much of the table its pages describe.

A small QC lab with instruments from several makers
ClarityQC/QA labs, CROs and academic labs that want instrument-independent software on permanent licenses.4 verified, 6 stated, 0 not stated of 10 rows
One database for acquisition, processing and reporting
Empower Chromatography Data SystemRegulated labs that want acquisition, processing, reporting and data distribution in one system.8 verified, 1 stated, 1 not stated of 10 rows
Results that pass through staged review and approval
Chromeleon CDSRegulated labs running LC, GC and mass spectrometry that need staged review and approval.7 verified, 1 stated, 2 not stated of 10 rows
Inspections from both FDA and an EU authority
OpenLab CDSRegulated labs running LC, GC and single-quad MS instruments that want a clause-by-clause Part 11 map.8 verified, 0 stated, 2 not stated of 10 rows
Many instruments and users on one server
LabSolutions CSLabs with many instruments and users that want one server database.4 verified, 4 stated, 2 not stated of 10 rows
A lab that runs one maker's chromatographs
SimplicityChrom CDSLabs running PerkinElmer chromatography instruments.0 verified, 7 stated, 3 not stated of 10 rows

verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.

Whatever you choose, validation stays with your lab under § 11.10(a). Write the steps above into your user requirement specification so they become tests, and scope the rest by risk as our guide to computer system validation describes.

Vendor by vendor

Each card shows the six rows a chromatography result leans on: the trail and its retention, who may change or sign, the signature and its link to the result, and the validation papers.

Empower Chromatography Data System

CDS
What it is
Chromatography software for acquiring, processing, reporting and storing chromatography data in a central database. It comes in QuickStart, Pro and Open Access interfaces for different users.
Who it fits
Regulated labs that want acquisition, processing, reporting and data distribution in one system.
Empower Chromatography Data System: Part 11 requirements
RequirementStatus
Secure, computer-generated, time-stamped audit trail§ 11.10(e)verified
Audit trail kept as long as the record§ 11.10(e)verifiedArchives keep results, methods and audit trails together.
Access and authority checks by role§ 11.10(d), (g)verifiedPrivileges can let a user sign for review but not approve.
Signature shows name, date and time, and meaning§ 11.50verifiedThe e-signature history shows the three manifestation items in readable form.
Signature linked to its record so it cannot be moved§ 11.70verified
Validation documentation to support the customer's own validation§ 11.10(a)verifiedValidation planning and reporting is offered as a Waters service.

verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.

Waters' own Part 11 pageread 2026-10-22

Chromeleon CDS

CDS
What it is
Chromatography data system software for instrument control, data processing, reporting and data management. Version 7.3.2 includes audit trail review tools and up to three signing stages per sequence.
Who it fits
Regulated labs running LC, GC and mass spectrometry that need staged review and approval.
Chromeleon CDS: Part 11 requirements
RequirementStatus
Secure, computer-generated, time-stamped audit trail§ 11.10(e)verified
Audit trail kept as long as the record§ 11.10(e)stated
Access and authority checks by role§ 11.10(d), (g)verified
Signature shows name, date and time, and meaning§ 11.50verifiedSubmit, review and approve levels; name, meaning and time can be included in reports.
Signature linked to its record so it cannot be moved§ 11.70verifiedA hash code is stored with the signed sequence and can be re-checked.
Validation documentation to support the customer's own validation§ 11.10(a)verifiedBuilt-in qualification tools plus IQ/OQ/PQ and validation services.

verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.

Check with the vendor

Some rows above are stated or not stated on Thermo Fisher Scientific's own pages. Ask Thermo Fisher Scientific for its validation documentation and test the control in your own validation before you rely on it.

Thermo Fisher Scientific's own Part 11 pageread 2026-10-22

OpenLab CDS

CDS
What it is
Chromatography data system software that controls acquisition and processing of LC, GC, single-quadrupole LC/MS and GC/MS, and A/D data. Agilent publishes a clause-by-clause Part 11 and Annex 11 white paper for version 2.8.
Who it fits
Regulated labs running LC, GC and single-quad MS instruments that want a clause-by-clause Part 11 map.
OpenLab CDS: Part 11 requirements
RequirementStatus
Secure, computer-generated, time-stamped audit trail§ 11.10(e)verified
Audit trail kept as long as the record§ 11.10(e)verifiedThe audit trail is stored inside the record and cannot be separated from it.
Access and authority checks by role§ 11.10(d), (g)verified
Signature shows name, date and time, and meaning§ 11.50verified
Signature linked to its record so it cannot be moved§ 11.70verifiedSigned records are check-summed; an altered file will not open.
Validation documentation to support the customer's own validation§ 11.10(a)not statedAgilent says it verifies the software; the paper does not name documents for customers.

verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.

Check with the vendor

Some rows above are stated or not stated on Agilent's own pages. Ask Agilent for its validation documentation and test the control in your own validation before you rely on it.

Agilent's own Part 11 pageread 2026-10-22

LabSolutions CS

CDS
What it is
The networked version of Shimadzu's LabSolutions analytical data system, keeping all data in a server database that client PCs reach over the network. It manages data from LC, GC, LC-MS and GC-MS and from other instruments.
Who it fits
Labs with many instruments and users that want one server database.
LabSolutions CS: Part 11 requirements
RequirementStatus
Secure, computer-generated, time-stamped audit trail§ 11.10(e)verifiedLogs all operations and can record the reason for changing settings.
Audit trail kept as long as the record§ 11.10(e)stated
Access and authority checks by role§ 11.10(d), (g)verified
Signature shows name, date and time, and meaning§ 11.50stated
Signature linked to its record so it cannot be moved§ 11.70stated
Validation documentation to support the customer's own validation§ 11.10(a)verifiedIQ/OQ documents, certificates of compliance and validation support.

verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.

Check with the vendor

Some rows above are stated or not stated on Shimadzu's own pages. Ask Shimadzu for its validation documentation and test the control in your own validation before you rely on it.

Shimadzu's own Part 11 pageread 2026-10-22

Clarity

CDS
What it is
Chromatography software that controls instruments from many manufacturers and processes their data on permanent licenses. It stores files without a database engine and offers user accounts, audit trail and electronic signatures for regulated work.
Who it fits
QC/QA labs, CROs and academic labs that want instrument-independent software on permanent licenses.
Clarity: Part 11 requirements
RequirementStatus
Secure, computer-generated, time-stamped audit trail§ 11.10(e)verified
Audit trail kept as long as the record§ 11.10(e)stated
Access and authority checks by role§ 11.10(d), (g)verified
Signature shows name, date and time, and meaning§ 11.50stated
Signature linked to its record so it cannot be moved§ 11.70stated
Validation documentation to support the customer's own validation§ 11.10(a)verifiedBuilt-in IQ and OQ, a validation kit and a declaration of software validation.

verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.

Check with the vendor

Some rows above are stated or not stated on DataApex's own pages. Ask DataApex for its validation documentation and test the control in your own validation before you rely on it.

DataApex's own Part 11 pageread 2026-10-22

SimplicityChrom CDS

CDS
What it is
Chromatography data system software for controlling PerkinElmer HPLC, UHPLC, GC and GC/MS instruments, processing data and generating results. Part 11 tools such as audit trail and review and approval are built into the main application.
Who it fits
Labs running PerkinElmer chromatography instruments.
SimplicityChrom CDS: Part 11 requirements
RequirementStatus
Secure, computer-generated, time-stamped audit trail§ 11.10(e)stated
Audit trail kept as long as the record§ 11.10(e)stated
Access and authority checks by role§ 11.10(d), (g)stated
Signature shows name, date and time, and meaning§ 11.50stated
Signature linked to its record so it cannot be moved§ 11.70stated
Validation documentation to support the customer's own validation§ 11.10(a)not stated

verified: read on the vendor's own documentation on 2026-10-22. stated: the vendor claims it; we did not check. not stated: nothing published.

Check with the vendor

Some rows above are stated or not stated on PerkinElmer's own pages. Ask PerkinElmer for its validation documentation and test the control in your own validation before you rely on it.

PerkinElmer's own Part 11 pageread 2026-10-22

How we read the vendors

Verdicts are editorial: no vendor can buy a verdict position or displace another vendor.

verified means we read the control described on the vendor's own documentation (help centre, validation pack page, compliance paper or trust page) on 2026-10-22. stated means the vendor claims it and we did not check it. not stated means the vendor publishes nothing on it.

FDA keeps no list of certified or approved Part 11 software. Compliance is a validation claim each regulated company makes for its own use of a system, so a vendor's Part 11 claim is where your validation starts, not where it ends.

Questions

Is there an FDA-certified or approved CDS?

No. FDA keeps no list of certified or approved Part 11 software. Part 11 binds the people who use a system, so a CDS vendor's Part 11 claim means it states its software supports the controls. Your lab still validates the system for its own use § 11.10(a) and writes the procedures around it.

Can we keep the signed printout and archive or delete the data files?

Not for a chromatogram you can reprocess. FDA's 2018 Q&A calls a chromatographic record that lets you change the baseline and reprocess “dynamic”, and says a printout of a dynamic record “would not satisfy CGMP requirements to retain original records or true copies”. A true copy of a dynamic record may be kept in the original format or one that preserves its content and meaning, provided a suitable reader is readily available. Plan the archive around the data file, its metadata and its trail.

Is manual integration allowed?

The 2018 Q&A does not use the words “manual integration”. What it says about reprocessing covers it: the trail should hold the integration parameters and “details of a reprocessing” with a justification (answer 1.c), reprocessing “should not be regularly needed”, and when it happens your written procedure must be followed and “each result retained for review” (answer 14). Your SOP decides when a hand-drawn baseline is allowed; the CDS has to make every one visible to the reviewer.

Who reviews the CDS audit trail, and how often?

Part 11 requires the trail § 11.10(e), not a review schedule. FDA's 2018 Q&A says the people who review the record should review the trail of changes to it “as they review the rest of the record”, at the frequency CGMP sets for the data (for example, before batch release) or, where none is set, at a frequency based on risk. EU Annex 11 § 9 says trails should be “regularly reviewed”. Our audit trail review checklist builds the worksheet, with a chromatography system as its worked example.

Does the Q&A apply to a GLP or device test lab?

It is written for drug CGMP (parts 210, 211 and 212) and is nonbinding. A GLP or device lab is held to its own predicate rules, such as § 58.130(e) for GLP data, which says changes must not obscure the original entry. The chromatography answers still make a practical test of any CDS you are about to buy.

Do we need a CDS if our LIMS holds the results?

The LIMS usually holds the reported value; the CDS holds the raw data, the processing and its trail, which is the dynamic record the Q&A is about. Both carry Part 11 rows, and where a LIMS ends and a CDS begins comes down to the record each one owns. Our LIMS comparison reads the systems on the results side against the same requirement rows.

Sources